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Liquid Handling · Automated pipetting · High-throughput screening · 2021 · (see PMC)

Adapting a Low-Cost and Open-Source Commercial Pipetting Robot for Nanoliter Liquid Handling

Low-volume liquid handling capabilities in bioanalytical workflows can dramatically improve sample processing efficiency and reduce reagent costs, yet many commercial nanoliter liquid handlers cost tens of thousands of dollars or more. We have successfully adapted a low-cost and open-source commercial pipetting robot, the Opentrons OT-1, to accurately aspirate and dispense nanoliter volumes.

Performance the paper reports

1 of 5
  1. Motion—Motion accuracy: not reported
  2. Volume4%Volumetric accuracy: reported
  3. Viability—Cell viability: not reported
  4. Unattended—Unattended operation: not reported
  5. Standard—Standard compliance: not reported
  • Volumetric accuracy4%
    For 15 nL transfers, the volume measurements indicated less than 4% error and 4% CV.

How hard this is to adopt

3.4 of 5, higher is easier

Each score is shown against the range the other 59 builds actually occupy, because no criterion uses the full 1–5 scale. These describe how reproducible the build is, not how good the science is.

  • Resolution

    5/1–5

    15-50 nL transfers with 0.2% error and 2.0% CV at 50 nL, with 20 nL treated as the reliable lower limit via a 10 uL gastight syringe hydraulic path.

  • Throughput

    3/2–5

    Single syringe and capillary forming one fluid path of 10 uL capacity; automates the full nanoPOTS chip workflow but has no independently controlled second channel.

  • Parts sourcing

    3/2–4

    Mix of common parts and custom/printed components.

  • Skill needed

    4/2–4

    Build/operation described as low-skill or basic assembly.

  • Facilities needed

    3/2–4

    Requires accessible but nontrivial lab/maker equipment.

  • Documentation

    2/2–5

    Open build documentation is not clearly identified.

  • Validation effort

    4/2–4

    Two orthogonal methods (capillary plug and fluorescence) at 15/20/50 nL in water and viscous DMSO, n=15-100, plus a side-by-side comparison against the in-house $50k nanoliter pipettor.

  • Cycle time

    3/1–4

    ~11 s per well and 10 wells in ~3 min, with throughput called relatively low; no timing comparison reported against manual or commercial handling.

2 further criteria are recorded but not shown
  • Application Level — scored 4 (75% of records share one value), so it cannot separate one build from another.
  • Build Time (scored for only 6 of 60 records), so it cannot separate one build from another.

Both remain in the published dataset.

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Publication data

Matched by doi · retrieved 2026-07-21

Abstract

Low-volume liquid handling capabilities in bioanalytical workflows can dramatically improve sample processing efficiency and reduce reagent costs, yet many commercial nanoliter liquid handlers cost tens of thousands of dollars or more. We have successfully adapted a low-cost and open-source commercial pipetting robot, the Opentrons OT-1, to accurately aspirate and dispense nanoliter volumes. Based on fluorescence measurements, the modified OT-1 was able to reproducibly transfer 50 nL of water with less than 3% measurement error and 5% coefficient of variation (CV). For 15 nL transfers, the volume measurements indicated less than 4% error and 4% CV. We applied this platform to the preparation of low-nanogram proteomic samples for liquid chromatography-mass spectrometry analysis, demonstrating that the modified OT-1 is an effective platform for nanoliter liquid handling. At a total materials cost of less than $6000, including the commercial liquid handler and all modifications, this system is also far less expensive than other platforms with similar capabilities, placing automated nanoliter handling within reach of a far broader scientific community.

Bibliographic details

Published
2020-11-20
Journal/source
SLAS Technology
Publisher
Elsevier BV
DOI
10.1177/2472630320973591
Type
journal-article
Language
en
Volume / issue
26 / 3
Pages
311-319
ISSN
2472-6303

Access and metrics

Open access
Yes
OA status
hybrid
License
cc-by-nc-nd
Version
publishedVersion
Cited by
33
References
24
Retracted
No

Authors and affiliations

  1. Nathanial B. AxtellBrigham Young University
  2. Thy TruongBrigham Young University
  3. Yiran LiangBrigham Young University
  4. Adam L. AposhianBrigham Young University
  5. Kei G. I. WebberBrigham Young University
  6. Ying ZhuBrigham Young University · Pacific Northwest National Laboratory · Environmental Molecular Sciences Laboratory
  7. Yongzheng CongBrigham Young University · Pacific Northwest National Laboratory · Environmental Molecular Sciences Laboratory
  8. Richard H. CarsonBrigham Young University
  9. Ryan KellyCorresponding authorBrigham Young University · Pacific Northwest National Laboratory · Environmental Molecular Sciences Laboratory

Topics and keywords

Microfluidic and Bio-sensing TechnologiesBiosensors and Analytical DetectionInnovative Microfluidic and Catalytic Techniques InnovationPipetteWorkflowVolume (thermodynamics)BioanalysisOpen sourceProcess engineeringComputer scienceChromatographyReagentChemistryEngineeringPhysics

Funding

  • National Cancer Institute · R33CA225248
Perspective and practical signals

Why it matters

Practical paper showing how open-source hardware is used/adapted in real screening pipelines.

Limitations

No limitation note curated yet.