Liquid Handling · Automated pipetting · High-throughput screening · 2021 · (see PMC)
Adapting a Low-Cost and Open-Source Commercial Pipetting Robot for Nanoliter Liquid Handling
Low-volume liquid handling capabilities in bioanalytical workflows can dramatically improve sample processing efficiency and reduce reagent costs, yet many commercial nanoliter liquid handlers cost tens of thousands of dollars or more. We have successfully adapted a low-cost and open-source commercial pipetting robot, the Opentrons OT-1, to accurately aspirate and dispense nanoliter volumes.
Performance the paper reports
1 of 5- Motion—Motion accuracy: not reported
- Volume4%Volumetric accuracy: reported
- Viability—Cell viability: not reported
- Unattended—Unattended operation: not reported
- Standard—Standard compliance: not reported
- Volumetric accuracy4%
For 15 nL transfers, the volume measurements indicated less than 4% error and 4% CV.
How hard this is to adopt
3.4 of 5, higher is easierEach score is shown against the range the other 59 builds actually occupy, because no criterion uses the full 1–5 scale. These describe how reproducible the build is, not how good the science is.
Resolution
5/1–515-50 nL transfers with 0.2% error and 2.0% CV at 50 nL, with 20 nL treated as the reliable lower limit via a 10 uL gastight syringe hydraulic path.
Throughput
3/2–5Single syringe and capillary forming one fluid path of 10 uL capacity; automates the full nanoPOTS chip workflow but has no independently controlled second channel.
Parts sourcing
3/2–4Mix of common parts and custom/printed components.
Skill needed
4/2–4Build/operation described as low-skill or basic assembly.
Facilities needed
3/2–4Requires accessible but nontrivial lab/maker equipment.
Documentation
2/2–5Open build documentation is not clearly identified.
Validation effort
4/2–4Two orthogonal methods (capillary plug and fluorescence) at 15/20/50 nL in water and viscous DMSO, n=15-100, plus a side-by-side comparison against the in-house $50k nanoliter pipettor.
Cycle time
3/1–4~11 s per well and 10 wells in ~3 min, with throughput called relatively low; no timing comparison reported against manual or commercial handling.
2 further criteria are recorded but not shown
- Application Level — scored 4 (75% of records share one value), so it cannot separate one build from another.
- Build Time (scored for only 6 of 60 records), so it cannot separate one build from another.
Both remain in the published dataset.
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Record metadata
Publication data
Matched by doi · retrieved 2026-07-21
Abstract
Low-volume liquid handling capabilities in bioanalytical workflows can dramatically improve sample processing efficiency and reduce reagent costs, yet many commercial nanoliter liquid handlers cost tens of thousands of dollars or more. We have successfully adapted a low-cost and open-source commercial pipetting robot, the Opentrons OT-1, to accurately aspirate and dispense nanoliter volumes. Based on fluorescence measurements, the modified OT-1 was able to reproducibly transfer 50 nL of water with less than 3% measurement error and 5% coefficient of variation (CV). For 15 nL transfers, the volume measurements indicated less than 4% error and 4% CV. We applied this platform to the preparation of low-nanogram proteomic samples for liquid chromatography-mass spectrometry analysis, demonstrating that the modified OT-1 is an effective platform for nanoliter liquid handling. At a total materials cost of less than $6000, including the commercial liquid handler and all modifications, this system is also far less expensive than other platforms with similar capabilities, placing automated nanoliter handling within reach of a far broader scientific community.
Bibliographic details
Access and metrics
Topics and keywords
Funding
- National Cancer Institute · R33CA225248
Perspective and practical signals
Why it matters
Practical paper showing how open-source hardware is used/adapted in real screening pipelines.
Limitations
No limitation note curated yet.